J5_9G33_002
3D structure
- PDB id
- 9G33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stalled 90S - Utp23-Krr1-deltaC3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9G33|1|D3|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G33_002 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.4236
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G33|1|D3|C|31
9G33|1|D3|U|32
9G33|1|D3|U|33
9G33|1|D3|G|34
9G33|1|D3|U|35
*
9G33|1|D3|A|473
9G33|1|D3|A|474
9G33|1|D3|A|475
9G33|1|D3|U|476
9G33|1|D3|A|477
9G33|1|D3|A|478
9G33|1|D3|C|479
*
9G33|1|D3|G|509
9G33|1|D3|G|510
9G33|1|D3|A|511
9G33|1|D3|A|512
9G33|1|D3|U|513
9G33|1|D3|G|514
*
9G33|1|D3|C|543
9G33|1|D3|A|544
9G33|1|D3|A|545
9G33|1|D3|U|546
*
9G33|1|D3|A|592
9G33|1|D3|U|593
9G33|1|D3|A|594
9G33|1|D3|G|595
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
- Chain DX
- 40S ribosomal protein S23-A
- Chain JE
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain UC
- Something about silencing protein 10
Coloring options: