J5_9G8M_003
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9G8M|1|L5|G|3618, 9G8M|1|L5|G|3623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9G8M_003 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1421
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9G8M|1|L5|G|2853
9G8M|1|L5|C|2854
9G8M|1|L5|A|2855
9G8M|1|L5|A|2856
9G8M|1|L5|G|2857
9G8M|1|L5|C|2858
9G8M|1|L5|C|2859
9G8M|1|L5|G|2860
9G8M|1|L5|G|2861
*
9G8M|1|L5|U|2885
9G8M|1|L5|G|2886
*
9G8M|1|L5|U|3611
9G8M|1|L5|G|3612
*
9G8M|1|L5|C|3616
9G8M|1|L5|G|3617
9G8M|1|L5|G|3618
9G8M|1|L5|A|3619
9G8M|1|L5|C|3620
9G8M|1|L5|C|3621
9G8M|1|L5|A|3622
9G8M|1|L5|G|3623
9G8M|1|L5|G|3624
*
9G8M|1|L5|C|3833
9G8M|1|L5|A|3834
9G8M|1|L5|C|3835
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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