J5_9GFT_013
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9GFT|1|N|A|532, 9GFT|1|N|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GFT_013 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.0738
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|N|C|531
9GFT|1|N|A|532
9GFT|1|N|G|533
*
9GFT|1|N|C|560
9GFT|1|N|G|561
9GFT|1|N|U|562
9GFT|1|N|A|563
9GFT|1|N|C|564
*
9GFT|1|N|G|577
9GFT|1|N|G|578
9GFT|1|N|G|579
*
9GFT|1|N|C|1261
9GFT|1|N|A|1262
*
9GFT|1|N|U|2017
9GFT|1|N|G|2018
Current chains
- Chain N
- 23S RNA
Nearby chains
- Chain R
- Large ribosomal subunit protein uL4
- Chain d
- Large ribosomal subunit protein bL20
- Chain e
- Large ribosomal subunit protein bL21
- Chain f
- Large ribosomal subunit protein uL22
- Chain n
- Large ribosomal subunit protein bL32
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