3D structure

PDB id
9GGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class II
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
9GGR|1|N|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9GGR_014 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.0925
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

9GGR|1|N|C|584
9GGR|1|N|G|585
9GGR|1|N|A|586
9GGR|1|N|C|587
9GGR|1|N|U|588
9GGR|1|N|U|589
*
9GGR|1|N|A|668
9GGR|1|N|G|669
9GGR|1|N|A|670
9GGR|1|N|C|671
*
9GGR|1|N|G|809
9GGR|1|N|U|810
9GGR|1|N|U|811
9GGR|1|N|C|812
*
9GGR|1|N|G|1195
9GGR|1|N|C|1196
*
9GGR|1|N|G|1250
9GGR|1|N|C|1251
9GGR|1|N|G|1252
9GGR|1|N|A|1253
9GGR|1|N|A|1254
9GGR|1|N|U|1255
9GGR|1|N|G|1256

Current chains

Chain N
23S ribosomal RNA

Nearby chains

Chain R
Large ribosomal subunit protein uL4
Chain Y
Large ribosomal subunit protein uL15
Chain d
Large ribosomal subunit protein bL20
Chain e
Large ribosomal subunit protein bL21
Chain q
Large ribosomal subunit protein bL35

Coloring options:


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