J5_9GHA_009

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UUUA*UUUG*CU*AG*CGGAUAAAA

Length

21 nucleotides

Bulged bases

9GHA|1|a|U|2076, 9GHA|1|a|G|2428, 9GHA|1|a|G|2429, 9GHA|1|a|A|2430, 9GHA|1|a|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9GHA_009 not in the Motif Atlas

Homologous match to J5_4WF9_007

Geometric discrepancy: 0.0693

The information below is about J5_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.1

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9GHA|1|a|U|2074
9GHA|1|a|U|2075
9GHA|1|a|U|2076
9GHA|1|a|A|2077
*
9GHA|1|a|U|2243
9GHA|1|a|U|2244
9GHA|1|a|U|2245
9GHA|1|a|G|2246
*
9GHA|1|a|C|2258
9GHA|1|a|U|2259
*
9GHA|1|a|A|2281
9GHA|1|a|G|2282
*
9GHA|1|a|C|2427
9GHA|1|a|G|2428
9GHA|1|a|G|2429
9GHA|1|a|A|2430
9GHA|1|a|U|2431
9GHA|1|a|A|2432
9GHA|1|a|A|2433
9GHA|1|a|A|2434
9GHA|1|a|A|2435

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain 8

Transfer RNA; tRNA

Chain c

50S ribosomal protein L2

Chain k

50S ribosomal protein L15

Chain v

50S ribosomal protein L27

Chain w

50S ribosomal protein L28