3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
UUUA*UUUG*CU*AG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
9GHA|1|a|U|2076, 9GHA|1|a|G|2428, 9GHA|1|a|G|2429, 9GHA|1|a|A|2430, 9GHA|1|a|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9GHA_009 not in the Motif Atlas
Homologous match to J5_4WF9_007
Geometric discrepancy: 0.0693
The information below is about J5_4WF9_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

9GHA|1|a|U|2074
9GHA|1|a|U|2075
9GHA|1|a|U|2076
9GHA|1|a|A|2077
*
9GHA|1|a|U|2243
9GHA|1|a|U|2244
9GHA|1|a|U|2245
9GHA|1|a|G|2246
*
9GHA|1|a|C|2258
9GHA|1|a|U|2259
*
9GHA|1|a|A|2281
9GHA|1|a|G|2282
*
9GHA|1|a|C|2427
9GHA|1|a|G|2428
9GHA|1|a|G|2429
9GHA|1|a|A|2430
9GHA|1|a|U|2431
9GHA|1|a|A|2432
9GHA|1|a|A|2433
9GHA|1|a|A|2434
9GHA|1|a|A|2435

Current chains

Chain a
23S rRNA

Nearby chains

Chain 2
50S ribosomal protein L35
Chain 8
Transfer RNA; tRNA
Chain c
50S ribosomal protein L2
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27
Chain w
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2112 s