3D structure

PDB id
9GMO (explore in PDB, NAKB, or RNA 3D Hub)
Description
eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
Experimental method
ELECTRON MICROSCOPY
Resolution
2.59 Å

Loop

Sequence
GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
Length
24 nucleotides
Bulged bases
9GMO|1|A|C|2289, 9GMO|1|A|U|2350
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9GMO_002 not in the Motif Atlas
Homologous match to J5_8C3A_002
Geometric discrepancy: 0.0813
The information below is about J5_8C3A_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GMO|1|A|G|1335
9GMO|1|A|G|1336
9GMO|1|A|A|1337
9GMO|1|A|G|1338
9GMO|1|A|U|1339
9GMO|1|A|OMC|1340
*
9GMO|1|A|G|1516
9GMO|1|A|G|1517
9GMO|1|A|A|1518
9GMO|1|A|C|1519
*
9GMO|1|A|G|1658
9GMO|1|A|U|1659
9GMO|1|A|U|1660
9GMO|1|A|C|1661
*
9GMO|1|A|G|2288
9GMO|1|A|C|2289
9GMO|1|A|C|2290
*
9GMO|1|A|G|2345
9GMO|1|A|C|2346
9GMO|1|A|A|2347
9GMO|1|A|G|2348
9GMO|1|A|A|2349
9GMO|1|A|U|2350
9GMO|1|A|OMC|2351

Current chains

Chain A
28S rRNA

Nearby chains

Chain C
5.8S ribosomal RNA; 5.8S rRNA
Chain F
60S ribosomal protein L4
Chain U
60S ribosomal protein L27a
Chain Y
60S ribosomal protein L32
Chain k
60S ribosomal protein L28
Chain l
60S ribosomal protein L15
Chain r
60S ribosomal protein L13

Coloring options:


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