J5_9GMO_002
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)
- Length
- 24 nucleotides
- Bulged bases
- 9GMO|1|A|C|2289, 9GMO|1|A|U|2350
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9GMO_002 not in the Motif Atlas
- Homologous match to J5_8C3A_002
- Geometric discrepancy: 0.0813
- The information below is about J5_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9GMO|1|A|G|1335
9GMO|1|A|G|1336
9GMO|1|A|A|1337
9GMO|1|A|G|1338
9GMO|1|A|U|1339
9GMO|1|A|OMC|1340
*
9GMO|1|A|G|1516
9GMO|1|A|G|1517
9GMO|1|A|A|1518
9GMO|1|A|C|1519
*
9GMO|1|A|G|1658
9GMO|1|A|U|1659
9GMO|1|A|U|1660
9GMO|1|A|C|1661
*
9GMO|1|A|G|2288
9GMO|1|A|C|2289
9GMO|1|A|C|2290
*
9GMO|1|A|G|2345
9GMO|1|A|C|2346
9GMO|1|A|A|2347
9GMO|1|A|G|2348
9GMO|1|A|A|2349
9GMO|1|A|U|2350
9GMO|1|A|OMC|2351
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- 60S ribosomal protein L4
- Chain U
- 60S ribosomal protein L27a
- Chain Y
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L28
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
Coloring options: