J5_9H3G_009
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9H3G|1|h1|A|94, 9H3G|1|h1|C|426
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.2
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9H3G|1|h1|C|54
9H3G|1|h1|A|55
9H3G|1|h1|U|56
9H3G|1|h1|G|57
*
9H3G|1|h1|C|91
9H3G|1|h1|G|92
9H3G|1|h1|A|93
9H3G|1|h1|A|94
9H3G|1|h1|PSU|95
9H3G|1|h1|G|96
9H3G|1|h1|G|97
9H3G|1|h1|C|98
*
9H3G|1|h1|G|388
9H3G|1|h1|A|389
9H3G|1|h1|OMG|390
*
9H3G|1|h1|C|411
9H3G|1|h1|A|412
9H3G|1|h1|C|413
*
9H3G|1|h1|G|424
9H3G|1|h1|G|425
9H3G|1|h1|C|426
9H3G|1|h1|A|427
9H3G|1|h1|G|428
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain AB
- Small ribosomal subunit protein uS4y
- Chain Aa
- Small ribosomal subunit protein eS8z
- Chain BI
- Large ribosomal subunit protein uL14x/uL14z/uL14y
- Chain Ja
- Small ribosomal subunit protein eS4x
- Chain Ka
- Small ribosomal subunit protein eS24y
- Chain Ta
- Small ribosomal subunit protein eS6y
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