3D structure

PDB id
9HA4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.26 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
9HA4|1|A|A|532, 9HA4|1|A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9HA4_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.1675
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

9HA4|1|A|C|531
9HA4|1|A|A|532
9HA4|1|A|G|533
*
9HA4|1|A|C|560
9HA4|1|A|G|561
9HA4|1|A|U|562
9HA4|1|A|A|563
9HA4|1|A|C|564
*
9HA4|1|A|G|577
9HA4|1|A|G|578
9HA4|1|A|G|579
*
9HA4|1|A|C|1261
9HA4|1|A|A|1262
*
9HA4|1|A|U|2017
9HA4|1|A|G|2018

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21

Coloring options:


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