J5_9HA6_004

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9HA6|1|A|U|1758, 9HA6|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HA6_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1318

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|1674
9HA6|1|A|C|1675
9HA6|1|A|A|1676
9HA6|1|A|A|1677
9HA6|1|A|A|1678
9HA6|1|A|A|1679
9HA6|1|A|U|1680
9HA6|1|A|G|1681
9HA6|1|A|G|1682
*
9HA6|1|A|C|1706
9HA6|1|A|G|1707
*
9HA6|1|A|U|1751
9HA6|1|A|C|1752
*
9HA6|1|A|G|1756
9HA6|1|A|A|1757
9HA6|1|A|U|1758
9HA6|1|A|A|1759
9HA6|1|A|C|1760
9HA6|1|A|C|1761
9HA6|1|A|A|1762
9HA6|1|A|G|1763
9HA6|1|A|C|1764
*
9HA6|1|A|G|1988
9HA6|1|A|G|1989
9HA6|1|A|C|1990

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19