J5_9HAM_002

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CAG*CGUAC*GGG*CA*UG

Length

15 nucleotides

Bulged bases

9HAM|1|A|A|532, 9HAM|1|A|U|562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HAM_002 not in the Motif Atlas

Homologous match to J5_5J7L_014

Geometric discrepancy: 0.1979

The information below is about J5_5J7L_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.5

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9HAM|1|A|C|531
9HAM|1|A|A|532
9HAM|1|A|G|533
*
9HAM|1|A|C|560
9HAM|1|A|G|561
9HAM|1|A|U|562
9HAM|1|A|A|563
9HAM|1|A|C|564
*
9HAM|1|A|G|577
9HAM|1|A|G|578
9HAM|1|A|G|579
*
9HAM|1|A|C|1261
9HAM|1|A|A|1262
*
9HAM|1|A|U|2017
9HAM|1|A|G|2018

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21