J5_9HAM_004

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9HAM|1|A|C|1675, 9HAM|1|A|U|1758, 9HAM|1|A|G|1763

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9HAM_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.3096

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HAM|1|A|G|1674
9HAM|1|A|C|1675
9HAM|1|A|A|1676
9HAM|1|A|A|1677
9HAM|1|A|A|1678
9HAM|1|A|A|1679
9HAM|1|A|U|1680
9HAM|1|A|G|1681
9HAM|1|A|G|1682
*
9HAM|1|A|C|1706
9HAM|1|A|G|1707
*
9HAM|1|A|U|1751
9HAM|1|A|C|1752
*
9HAM|1|A|G|1756
9HAM|1|A|A|1757
9HAM|1|A|U|1758
9HAM|1|A|A|1759
9HAM|1|A|C|1760
9HAM|1|A|C|1761
9HAM|1|A|A|1762
9HAM|1|A|G|1763
9HAM|1|A|C|1764
*
9HAM|1|A|G|1988
9HAM|1|A|G|1989
9HAM|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19