J5_9HM0_003
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUA*UUUU*AU*AG*CGAAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9HM0|1|AA|U|1976, 9HM0|1|AA|G|2694, 9HM0|1|AA|A|2695, 9HM0|1|AA|A|2696, 9HM0|1|AA|U|2697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9HM0_003 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1167
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9HM0|1|AA|U|1974
9HM0|1|AA|U|1975
9HM0|1|AA|U|1976
9HM0|1|AA|A|1977
*
9HM0|1|AA|U|2269
9HM0|1|AA|U|2270
9HM0|1|AA|U|2271
9HM0|1|AA|U|2272
*
9HM0|1|AA|A|2284
9HM0|1|AA|U|2285
*
9HM0|1|AA|A|2308
9HM0|1|AA|G|2309
*
9HM0|1|AA|C|2693
9HM0|1|AA|G|2694
9HM0|1|AA|A|2695
9HM0|1|AA|A|2696
9HM0|1|AA|U|2697
9HM0|1|AA|A|2698
9HM0|1|AA|A|2699
9HM0|1|AA|A|2700
9HM0|1|AA|A|2701
Current chains
- Chain AA
- 21S mitochondrial rRNA
Nearby chains
- Chain BB
- Large ribosomal subunit protein uL2m
- Chain JJ
- Large ribosomal subunit protein uL15m
- Chain RR
- Large ribosomal subunit protein bL27m
- Chain SS
- Large ribosomal subunit protein bL28m
- Chain XX
- Large ribosomal subunit protein bL33m
- Chain t
- Transfer RNA; tRNA
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