J5_9HY6_002
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9HY6|1|b|A|532, 9HY6|1|b|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9HY6_002 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.194
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9HY6|1|b|C|531
9HY6|1|b|A|532
9HY6|1|b|G|533
*
9HY6|1|b|C|560
9HY6|1|b|G|561
9HY6|1|b|U|562
9HY6|1|b|A|563
9HY6|1|b|C|564
*
9HY6|1|b|G|577
9HY6|1|b|G|578
9HY6|1|b|G|579
*
9HY6|1|b|C|1261
9HY6|1|b|A|1262
*
9HY6|1|b|U|2017
9HY6|1|b|G|2018
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain e
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
- Chain s
- Large ribosomal subunit protein uL22
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