J5_9I3L_004

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9I3L|1|b|U|1760, 9I3L|1|b|G|1765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9I3L_004 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.2507

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.2

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9I3L|1|b|G|1676
9I3L|1|b|C|1677
9I3L|1|b|A|1678
9I3L|1|b|A|1679
9I3L|1|b|A|1680
9I3L|1|b|A|1681
9I3L|1|b|U|1682
9I3L|1|b|G|1683
9I3L|1|b|G|1684
*
9I3L|1|b|C|1708
9I3L|1|b|G|1709
*
9I3L|1|b|U|1753
9I3L|1|b|C|1754
*
9I3L|1|b|G|1758
9I3L|1|b|A|1759
9I3L|1|b|U|1760
9I3L|1|b|A|1761
9I3L|1|b|C|1762
9I3L|1|b|C|1763
9I3L|1|b|A|1764
9I3L|1|b|G|1765
9I3L|1|b|C|1766
*
9I3L|1|b|G|1992
9I3L|1|b|G|1993
9I3L|1|b|C|1994

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

Large ribosomal subunit protein uL14

Chain p

Large ribosomal subunit protein bL19