J5_9I3L_007
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9I3L|1|b|U|2080, 9I3L|1|b|G|2432, 9I3L|1|b|G|2433, 9I3L|1|b|A|2434, 9I3L|1|b|U|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I3L_007 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0839
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9I3L|1|b|U|2078
9I3L|1|b|U|2079
9I3L|1|b|U|2080
9I3L|1|b|A|2081
*
9I3L|1|b|U|2247
9I3L|1|b|U|2248
9I3L|1|b|U|2249
9I3L|1|b|G|2250
*
9I3L|1|b|C|2262
9I3L|1|b|U|2263
*
9I3L|1|b|A|2285
9I3L|1|b|G|2286
*
9I3L|1|b|C|2431
9I3L|1|b|G|2432
9I3L|1|b|G|2433
9I3L|1|b|A|2434
9I3L|1|b|U|2435
9I3L|1|b|A|2436
9I3L|1|b|A|2437
9I3L|1|b|A|2438
9I3L|1|b|A|2439
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL28
- Chain 4
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain c
- Large ribosomal subunit protein uL2
- Chain l
- Large ribosomal subunit protein uL15
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: