J5_9I88_005
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9I88|1|A|G|1785, 9I88|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I88_005 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.1332
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9I88|1|A|G|1718
9I88|1|A|C|1719
9I88|1|A|A|1720
9I88|1|A|A|1721
9I88|1|A|A|1722
9I88|1|A|A|1723
9I88|1|A|U|1724
9I88|1|A|G|1725
9I88|1|A|A|1726
*
9I88|1|A|U|1750
9I88|1|A|G|1751
*
9I88|1|A|C|1778
9I88|1|A|C|1779
*
9I88|1|A|G|1783
9I88|1|A|U|1784
9I88|1|A|G|1785
9I88|1|A|A|1786
9I88|1|A|A|1787
9I88|1|A|U|1788
9I88|1|A|A|1789
9I88|1|A|G|1790
9I88|1|A|G|1791
*
9I88|1|A|C|2015
9I88|1|A|A|2016
9I88|1|A|C|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- Large ribosomal subunit protein uL3
- Chain N
- Large ribosomal subunit protein uL14
- Chain S
- Large ribosomal subunit protein bL19
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: