J5_9I88_007
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9I88|1|A|U|2103, 9I88|1|A|G|2455, 9I88|1|A|G|2456, 9I88|1|A|A|2457, 9I88|1|A|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9I88_007 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.117
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9I88|1|A|U|2101
9I88|1|A|U|2102
9I88|1|A|U|2103
9I88|1|A|A|2104
*
9I88|1|A|U|2270
9I88|1|A|U|2271
9I88|1|A|U|2272
9I88|1|A|G|2273
*
9I88|1|A|C|2285
9I88|1|A|G|2286
*
9I88|1|A|C|2308
9I88|1|A|G|2309
*
9I88|1|A|C|2454
9I88|1|A|G|2455
9I88|1|A|G|2456
9I88|1|A|A|2457
9I88|1|A|U|2458
9I88|1|A|A|2459
9I88|1|A|A|2460
9I88|1|A|A|2461
9I88|1|A|A|2462
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL28
- Chain 8
- Large ribosomal subunit protein bL35
- Chain G
- Large ribosomal subunit protein uL2
- Chain O
- Large ribosomal subunit protein uL15
- Chain Z
- Large ribosomal subunit protein bL27
Coloring options: