J5_9J1M_002
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9J1M|1|A|C|620, 9J1M|1|A|U|664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9J1M_002 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.0786
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9J1M|1|A|C|619
9J1M|1|A|C|620
9J1M|1|A|G|621
*
9J1M|1|A|C|662
9J1M|1|A|G|663
9J1M|1|A|U|664
9J1M|1|A|G|665
9J1M|1|A|C|666
*
9J1M|1|A|G|679
9J1M|1|A|A|680
9J1M|1|A|G|681
*
9J1M|1|A|C|1392
9J1M|1|A|A|1393
*
9J1M|1|A|U|2255
9J1M|1|A|G|2256
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32
- Chain E
- Large ribosomal subunit protein uL4
- Chain J
- Large ribosomal subunit protein uL13
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
- Chain S
- Large ribosomal subunit protein uL22
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