J5_9JMK_001

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9JMK|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9JMK|1|A|C|47
9JMK|1|A|G|48
9JMK|1|A|A|49
9JMK|1|A|U|50
9JMK|1|A|G|51
9JMK|1|A|A|52
9JMK|1|A|A|53
9JMK|1|A|G|54
*
9JMK|1|A|C|116
9JMK|1|A|G|117
9JMK|1|A|A|118
9JMK|1|A|A|119
9JMK|1|A|U|120
9JMK|1|A|G|121
*
9JMK|1|A|C|130
9JMK|1|A|A|131
*
9JMK|1|A|U|148
9JMK|1|A|A|149
9JMK|1|A|U|150
*
9JMK|1|A|A|176
9JMK|1|A|G|177
9JMK|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34