J5_9N2B_006
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9N2B|1|23|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9N2B_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0419
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9N2B|1|23|C|584
9N2B|1|23|G|585
9N2B|1|23|A|586
9N2B|1|23|C|587
9N2B|1|23|U|588
9N2B|1|23|U|589
*
9N2B|1|23|A|668
9N2B|1|23|G|669
9N2B|1|23|A|670
9N2B|1|23|C|671
*
9N2B|1|23|G|809
9N2B|1|23|U|810
9N2B|1|23|U|811
9N2B|1|23|C|812
*
9N2B|1|23|G|1195
9N2B|1|23|C|1196
*
9N2B|1|23|G|1250
9N2B|1|23|C|1251
9N2B|1|23|G|1252
9N2B|1|23|A|1253
9N2B|1|23|A|1254
9N2B|1|23|U|1255
9N2B|1|23|G|1256
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4
- Chain LO
- 50S ribosomal protein L15
- Chain LT
- 50S ribosomal protein L20
- Chain LU
- 50S ribosomal protein L21
- Chain Li
- 50S ribosomal protein L35
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