J5_9N6Y_002

3D structure

PDB id

9N6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9N6Y|1|L1|A|544, 9N6Y|1|L1|A|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N6Y|1|L1|C|31
9N6Y|1|L1|U|32
9N6Y|1|L1|U|33
9N6Y|1|L1|G|34
9N6Y|1|L1|U|35
*
9N6Y|1|L1|A|473
9N6Y|1|L1|A|474
9N6Y|1|L1|A|475
9N6Y|1|L1|U|476
9N6Y|1|L1|A|477
9N6Y|1|L1|A|478
9N6Y|1|L1|C|479
*
9N6Y|1|L1|G|509
9N6Y|1|L1|G|510
9N6Y|1|L1|A|511
9N6Y|1|L1|A|512
9N6Y|1|L1|U|513
9N6Y|1|L1|G|514
*
9N6Y|1|L1|C|543
9N6Y|1|L1|A|544
9N6Y|1|L1|A|545
9N6Y|1|L1|U|546
*
9N6Y|1|L1|A|592
9N6Y|1|L1|U|593
9N6Y|1|L1|A|594
9N6Y|1|L1|G|595

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain NB

Something about silencing protein 10

Chain SG

Ribosomal RNA-processing protein 9

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A