J5_9N6Z_001

3D structure

PDB id

9N6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State D

Experimental method

ELECTRON MICROSCOPY

Resolution

4.74 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9N6Z|1|L1|A|544, 9N6Z|1|L1|A|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9N6Z|1|L1|C|31
9N6Z|1|L1|U|32
9N6Z|1|L1|U|33
9N6Z|1|L1|G|34
9N6Z|1|L1|U|35
*
9N6Z|1|L1|A|473
9N6Z|1|L1|A|474
9N6Z|1|L1|A|475
9N6Z|1|L1|U|476
9N6Z|1|L1|A|477
9N6Z|1|L1|A|478
9N6Z|1|L1|C|479
*
9N6Z|1|L1|G|509
9N6Z|1|L1|G|510
9N6Z|1|L1|A|511
9N6Z|1|L1|A|512
9N6Z|1|L1|U|513
9N6Z|1|L1|G|514
*
9N6Z|1|L1|C|543
9N6Z|1|L1|A|544
9N6Z|1|L1|A|545
9N6Z|1|L1|U|546
*
9N6Z|1|L1|A|592
9N6Z|1|L1|U|593
9N6Z|1|L1|A|594
9N6Z|1|L1|G|595

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S23-A