J5_9N70_003

3D structure

PDB id

9N70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State E

Experimental method

ELECTRON MICROSCOPY

Resolution

5.17 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9N70|1|L1|A|93, 9N70|1|L1|A|425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9N70_003 not in the Motif Atlas

Homologous match to J5_9PN5_009

Geometric discrepancy: 0.4978

The information below is about J5_9PN5_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9N70|1|L1|C|54
9N70|1|L1|A|55
9N70|1|L1|U|56
9N70|1|L1|G|57
*
9N70|1|L1|C|90
9N70|1|L1|G|91
9N70|1|L1|A|92
9N70|1|L1|A|93
9N70|1|L1|U|94
9N70|1|L1|G|95
9N70|1|L1|G|96
9N70|1|L1|C|97
*
9N70|1|L1|G|386
9N70|1|L1|A|387
9N70|1|L1|G|388
*
9N70|1|L1|C|409
9N70|1|L1|A|410
9N70|1|L1|C|411
*
9N70|1|L1|G|422
9N70|1|L1|G|423
9N70|1|L1|C|424
9N70|1|L1|A|425
9N70|1|L1|G|426

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain L8

40S ribosomal protein S8-A

Chain L9

40S ribosomal protein S9-A

Chain LF

40S ribosomal protein S24-A

Chain LV

Ribosome biogenesis protein ENP2