J5_9NJV_003

3D structure

PDB id

9NJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex (bL33 absent)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9NJV|1|R1|U|1758, 9NJV|1|R1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NJV_003 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.088

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9NJV|1|R1|G|1674
9NJV|1|R1|C|1675
9NJV|1|R1|A|1676
9NJV|1|R1|A|1677
9NJV|1|R1|A|1678
9NJV|1|R1|A|1679
9NJV|1|R1|U|1680
9NJV|1|R1|G|1681
9NJV|1|R1|G|1682
*
9NJV|1|R1|C|1706
9NJV|1|R1|G|1707
*
9NJV|1|R1|U|1751
9NJV|1|R1|C|1752
*
9NJV|1|R1|G|1756
9NJV|1|R1|A|1757
9NJV|1|R1|U|1758
9NJV|1|R1|A|1759
9NJV|1|R1|C|1760
9NJV|1|R1|C|1761
9NJV|1|R1|A|1762
9NJV|1|R1|G|1763
9NJV|1|R1|C|1764
*
9NJV|1|R1|G|1988
9NJV|1|R1|G|1989
9NJV|1|R1|C|1990

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain 3

50S ribosomal protein L3

Chain R3

Small subunit ribosomal RNA; SSU rRNA