J5_9NL5_002
3D structure
- PDB id
- 9NL5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9NL5|1|R1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NL5_002 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0451
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9NL5|1|R1|C|584
9NL5|1|R1|G|585
9NL5|1|R1|A|586
9NL5|1|R1|C|587
9NL5|1|R1|U|588
9NL5|1|R1|U|589
*
9NL5|1|R1|A|668
9NL5|1|R1|G|669
9NL5|1|R1|A|670
9NL5|1|R1|C|671
*
9NL5|1|R1|G|809
9NL5|1|R1|U|810
9NL5|1|R1|U|811
9NL5|1|R1|C|812
*
9NL5|1|R1|G|1195
9NL5|1|R1|C|1196
*
9NL5|1|R1|G|1250
9NL5|1|R1|C|1251
9NL5|1|R1|G|1252
9NL5|1|R1|A|1253
9NL5|1|R1|A|1254
9NL5|1|R1|U|1255
9NL5|1|R1|G|1256
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L15
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 21
- Large ribosomal subunit protein bL21
- Chain 35
- Large ribosomal subunit protein bL35
- Chain 4
- Large ribosomal subunit protein uL4
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