J5_9NLF_008
3D structure
- PDB id
- 9NLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9NLF|1|R3|A|60, 9NLF|1|R3|A|109, 9NLF|1|R3|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NLF_008 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0925
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NLF|1|R3|C|58
9NLF|1|R3|A|59
9NLF|1|R3|A|60
9NLF|1|R3|G|61
*
9NLF|1|R3|C|106
9NLF|1|R3|G|107
9NLF|1|R3|G|108
9NLF|1|R3|A|109
9NLF|1|R3|C|110
9NLF|1|R3|G|111
9NLF|1|R3|G|112
9NLF|1|R3|G|113
*
9NLF|1|R3|C|314
9NLF|1|R3|A|315
9NLF|1|R3|C|316
*
9NLF|1|R3|G|337
9NLF|1|R3|A|338
9NLF|1|R3|C|339
*
9NLF|1|R3|G|350
9NLF|1|R3|G|351
9NLF|1|R3|C|352
9NLF|1|R3|A|353
9NLF|1|R3|G|354
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L14
- Chain 19
- 50S ribosomal protein L19
- Chain sp
- Small ribosomal subunit protein bS16
- Chain st
- 30S ribosomal protein S20
Coloring options: