J5_9NLJ_005
3D structure
- PDB id
- 9NLJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with Uup-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9NLJ|1|R1|U|2076, 9NLJ|1|R1|G|2428, 9NLJ|1|R1|G|2429, 9NLJ|1|R1|A|2430, 9NLJ|1|R1|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NLJ_005 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0937
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9NLJ|1|R1|U|2074
9NLJ|1|R1|U|2075
9NLJ|1|R1|U|2076
9NLJ|1|R1|A|2077
*
9NLJ|1|R1|U|2243
9NLJ|1|R1|U|2244
9NLJ|1|R1|U|2245
9NLJ|1|R1|G|2246
*
9NLJ|1|R1|C|2258
9NLJ|1|R1|U|2259
*
9NLJ|1|R1|A|2281
9NLJ|1|R1|G|2282
*
9NLJ|1|R1|C|2427
9NLJ|1|R1|G|2428
9NLJ|1|R1|G|2429
9NLJ|1|R1|A|2430
9NLJ|1|R1|U|2431
9NLJ|1|R1|A|2432
9NLJ|1|R1|A|2433
9NLJ|1|R1|A|2434
9NLJ|1|R1|A|2435
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- Large ribosomal subunit protein uL15
- Chain 2
- 50S ribosomal protein L2
- Chain 27
- Large ribosomal subunit protein bL27
- Chain 28
- 50S ribosomal protein L28
- Chain 33
- Large ribosomal subunit protein bL33
- Chain 35
- Large ribosomal subunit protein bL35
- Chain U
- Uup
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