J5_9NLS_003
3D structure
- PDB id
- 9NLS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9NLS|1|R1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9NLS_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0702
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9NLS|1|R1|C|584
9NLS|1|R1|G|585
9NLS|1|R1|A|586
9NLS|1|R1|C|587
9NLS|1|R1|U|588
9NLS|1|R1|U|589
*
9NLS|1|R1|A|668
9NLS|1|R1|G|669
9NLS|1|R1|A|670
9NLS|1|R1|C|671
*
9NLS|1|R1|G|809
9NLS|1|R1|U|810
9NLS|1|R1|U|811
9NLS|1|R1|C|812
*
9NLS|1|R1|G|1195
9NLS|1|R1|C|1196
*
9NLS|1|R1|G|1250
9NLS|1|R1|C|1251
9NLS|1|R1|G|1252
9NLS|1|R1|A|1253
9NLS|1|R1|A|1254
9NLS|1|R1|U|1255
9NLS|1|R1|G|1256
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- Large ribosomal subunit protein uL15
- Chain 20
- Large ribosomal subunit protein bL20
- Chain 21
- Large ribosomal subunit protein bL21
- Chain 35
- Large ribosomal subunit protein bL35
- Chain 4
- Large ribosomal subunit protein uL4
Coloring options: