J5_9OFV_001
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9OFV|1|i|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9OFV_001 not in the Motif Atlas
- Homologous match to J5_9PN5_001
- Geometric discrepancy: 0.0392
- The information below is about J5_9PN5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9OFV|1|f|A|20
9OFV|1|f|G|21
9OFV|1|f|G|22
*
9OFV|1|i|C|35
9OFV|1|i|G|36
9OFV|1|i|A|37
9OFV|1|i|U|38
9OFV|1|i|G|39
9OFV|1|i|A|40
9OFV|1|i|A|41
9OFV|1|i|G|42
*
9OFV|1|i|U|102
9OFV|1|i|G|103
9OFV|1|i|A|104
9OFV|1|i|A|105
9OFV|1|i|C|106
9OFV|1|i|G|107
*
9OFV|1|i|C|115
9OFV|1|i|G|116
*
9OFV|1|i|C|137
9OFV|1|i|A|138
9OFV|1|i|U|139
Current chains
- Chain f
- 25S rRNA
- Chain i
- 5.8S rRNA
Nearby chains
- Chain U
- 60S ribosomal protein L35-A
- Chain W
- 60S ribosomal protein L37-A
- Chain Y
- 60S ribosomal protein L39
- Chain b0
- 60S ribosomal protein L25
Coloring options: