J5_9OFV_004
3D structure
- PDB id
- 9OFV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9OFV|1|f|G|2116, 9OFV|1|f|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9OFV_004 not in the Motif Atlas
- Homologous match to J5_9PN5_004
- Geometric discrepancy: 0.0415
- The information below is about J5_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.4
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
9OFV|1|f|G|1906
9OFV|1|f|C|1907
9OFV|1|f|A|1908
9OFV|1|f|A|1909
9OFV|1|f|A|1910
9OFV|1|f|A|1911
9OFV|1|f|U|1912
9OFV|1|f|A|1913
9OFV|1|f|G|1914
*
9OFV|1|f|U|1938
9OFV|1|f|G|1939
*
9OFV|1|f|U|2109
9OFV|1|f|G|2110
*
9OFV|1|f|C|2114
9OFV|1|f|G|2115
9OFV|1|f|G|2116
9OFV|1|f|A|2117
9OFV|1|f|C|2118
9OFV|1|f|A|2119
9OFV|1|f|A|2120
9OFV|1|f|G|2121
9OFV|1|f|G|2122
*
9OFV|1|f|C|2331
9OFV|1|f|A|2332
9OFV|1|f|C|2333
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain 5
- 60S ribosomal protein L19-A
- Chain 9
- Large ribosomal subunit protein eL24A
- Chain I
- 60S ribosomal protein L23-A
- Chain k
- Large ribosomal subunit protein uL3
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