J5_9PIJ_007
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9PIJ|1|a|U|1758, 9PIJ|1|a|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PIJ_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2572
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PIJ|1|a|G|1674
9PIJ|1|a|C|1675
9PIJ|1|a|A|1676
9PIJ|1|a|A|1677
9PIJ|1|a|A|1678
9PIJ|1|a|A|1679
9PIJ|1|a|U|1680
9PIJ|1|a|G|1681
9PIJ|1|a|G|1682
*
9PIJ|1|a|C|1706
9PIJ|1|a|G|1707
*
9PIJ|1|a|U|1751
9PIJ|1|a|C|1752
*
9PIJ|1|a|G|1756
9PIJ|1|a|A|1757
9PIJ|1|a|U|1758
9PIJ|1|a|A|1759
9PIJ|1|a|C|1760
9PIJ|1|a|C|1761
9PIJ|1|a|A|1762
9PIJ|1|a|G|1763
9PIJ|1|a|C|1764
*
9PIJ|1|a|G|1988
9PIJ|1|a|G|1989
9PIJ|1|a|C|1990
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: