J5_9PJ8_006
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9PJ8|1|a|C|620, 9PJ8|1|a|U|645
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PJ8_006 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.1329
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9PJ8|1|a|C|619
9PJ8|1|a|C|620
9PJ8|1|a|G|621
*
9PJ8|1|a|C|643
9PJ8|1|a|G|644
9PJ8|1|a|U|645
9PJ8|1|a|G|646
9PJ8|1|a|C|647
*
9PJ8|1|a|G|660
9PJ8|1|a|A|661
9PJ8|1|a|G|662
*
9PJ8|1|a|C|1338
9PJ8|1|a|A|1339
*
9PJ8|1|a|U|2200
9PJ8|1|a|G|2201
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L13
- Chain p
- 50S ribosomal protein L20
- Chain q
- Large ribosomal subunit protein bL21
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
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