J5_9PKG_006
3D structure
- PDB id
- 9PKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9PKG|1|S2|C|593
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9PKG_006 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.1402
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PKG|1|S2|C|30
9PKG|1|S2|U|31
9PKG|1|S2|U|32
9PKG|1|S2|G|33
9PKG|1|S2|U|34
*
9PKG|1|S2|A|521
9PKG|1|S2|A|522
9PKG|1|S2|A|523
9PKG|1|S2|U|524
9PKG|1|S2|A|525
9PKG|1|S2|A|526
9PKG|1|S2|C|527
*
9PKG|1|S2|G|558
9PKG|1|S2|G|559
9PKG|1|S2|A|560
9PKG|1|S2|A|561
9PKG|1|S2|U|562
9PKG|1|S2|G|563
*
9PKG|1|S2|C|592
9PKG|1|S2|C|593
9PKG|1|S2|A|594
9PKG|1|S2|U|595
*
9PKG|1|S2|A|641
9PKG|1|S2|U|642
9PKG|1|S2|A|643
9PKG|1|S2|OMG|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Small ribosomal subunit protein eS30
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