J5_9Q6S_017
3D structure
- PDB id
- 9Q6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9Q6S|1|2A|U|2076, 9Q6S|1|2A|G|2428, 9Q6S|1|2A|G|2429, 9Q6S|1|2A|A|2430, 9Q6S|1|2A|U|2431, 9Q6S|1|2A|A|2434
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q6S_017 not in the Motif Atlas
- Homologous match to J5_8B0X_009
- Geometric discrepancy: 0.0813
- The information below is about J5_8B0X_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q6S|1|2A|U|2074
9Q6S|1|2A|U|2075
9Q6S|1|2A|U|2076
9Q6S|1|2A|A|2077
*
9Q6S|1|2A|U|2243
9Q6S|1|2A|U|2244
9Q6S|1|2A|U|2245
9Q6S|1|2A|G|2246
*
9Q6S|1|2A|C|2258
9Q6S|1|2A|G|2259
*
9Q6S|1|2A|C|2281
9Q6S|1|2A|G|2282
*
9Q6S|1|2A|C|2427
9Q6S|1|2A|G|2428
9Q6S|1|2A|G|2429
9Q6S|1|2A|A|2430
9Q6S|1|2A|U|2431
9Q6S|1|2A|A|2432
9Q6S|1|2A|A|2433
9Q6S|1|2A|A|2434
9Q6S|1|2A|A|2435
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2D
- 50S ribosomal protein L2
- Chain 2P
- 50S ribosomal protein L15
- Chain 2Z
- 50S ribosomal protein L25
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