J5_9Q87_006
3D structure
- PDB id
- 9Q87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.55 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9Q87|1|a|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9Q87_006 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.0295
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9Q87|1|a|C|586
9Q87|1|a|G|587
9Q87|1|a|A|588
9Q87|1|a|C|589
9Q87|1|a|U|590
9Q87|1|a|U|591
*
9Q87|1|a|A|670
9Q87|1|a|G|671
9Q87|1|a|A|672
9Q87|1|a|C|673
*
9Q87|1|a|G|811
9Q87|1|a|U|812
9Q87|1|a|U|813
9Q87|1|a|C|814
*
9Q87|1|a|G|1197
9Q87|1|a|C|1198
*
9Q87|1|a|G|1252
9Q87|1|a|C|1253
9Q87|1|a|G|1254
9Q87|1|a|A|1255
9Q87|1|a|A|1256
9Q87|1|a|U|1257
9Q87|1|a|G|1258
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain e
- Large ribosomal subunit protein uL4
- Chain k
- Large ribosomal subunit protein uL15
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
Coloring options: