J5_9QEH_002
3D structure
- PDB id
- 9QEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the A2085-methylated 50S ribosome of a MLSb resistant S. aureus strain "MNY196" in complex with solithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.08 Å
Loop
- Sequence
- UAG*CGUGC*GAA*UG*CA
- Length
- 15 nucleotides
- Bulged bases
- 9QEH|1|A|A|577, 9QEH|1|A|U|605
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9QEH_002 not in the Motif Atlas
- Homologous match to J5_4WF9_003
- Geometric discrepancy: 0.0461
- The information below is about J5_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9QEH|1|A|U|576
9QEH|1|A|A|577
9QEH|1|A|G|578
*
9QEH|1|A|C|603
9QEH|1|A|G|604
9QEH|1|A|U|605
9QEH|1|A|G|606
9QEH|1|A|C|607
*
9QEH|1|A|G|620
9QEH|1|A|A|621
9QEH|1|A|A|622
*
9QEH|1|A|U|1299
9QEH|1|A|G|1300
*
9QEH|1|A|C|2044
9QEH|1|A|A|2045
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL4
- Chain H
- Large ribosomal subunit protein uL13
- Chain O
- Large ribosomal subunit protein bL20
- Chain P
- Large ribosomal subunit protein bL21
- Chain Q
- Large ribosomal subunit protein uL22
- Chain Z
- Large ribosomal subunit protein bL32
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