J5_9QQA_001
3D structure
- PDB id
- 9QQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and NMT1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9QQA|1|A2|C|594
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9QQA_001 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.0873
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9QQA|1|A2|C|30
9QQA|1|A2|U|31
9QQA|1|A2|U|32
9QQA|1|A2|G|33
9QQA|1|A2|PSU|34
*
9QQA|1|A2|A|522
9QQA|1|A2|A|523
9QQA|1|A2|A|524
9QQA|1|A2|U|525
9QQA|1|A2|A|526
9QQA|1|A2|A|527
9QQA|1|A2|C|528
*
9QQA|1|A2|G|559
9QQA|1|A2|G|560
9QQA|1|A2|A|561
9QQA|1|A2|A|562
9QQA|1|A2|U|563
9QQA|1|A2|G|564
*
9QQA|1|A2|C|593
9QQA|1|A2|C|594
9QQA|1|A2|A|595
9QQA|1|A2|U|596
*
9QQA|1|A2|A|642
9QQA|1|A2|U|643
9QQA|1|A2|A|644
9QQA|1|A2|OMG|645
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
- Chain Ai
- Small ribosomal subunit protein uS4
- Chain Aw
- 40S ribosomal protein S23
Coloring options: