J5_9QQB_001

3D structure

PDB id

9QQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex of a translating ribosome, NAC, NMT1, and NatA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.43 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)

Length

26 nucleotides

Bulged bases

9QQB|1|A2|C|594

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9QQB|1|A2|C|30
9QQB|1|A2|U|31
9QQB|1|A2|U|32
9QQB|1|A2|G|33
9QQB|1|A2|PSU|34
*
9QQB|1|A2|A|522
9QQB|1|A2|A|523
9QQB|1|A2|A|524
9QQB|1|A2|U|525
9QQB|1|A2|A|526
9QQB|1|A2|A|527
9QQB|1|A2|C|528
*
9QQB|1|A2|G|559
9QQB|1|A2|G|560
9QQB|1|A2|A|561
9QQB|1|A2|A|562
9QQB|1|A2|U|563
9QQB|1|A2|G|564
*
9QQB|1|A2|C|593
9QQB|1|A2|C|594
9QQB|1|A2|A|595
9QQB|1|A2|U|596
*
9QQB|1|A2|A|642
9QQB|1|A2|U|643
9QQB|1|A2|A|644
9QQB|1|A2|OMG|645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Ai

Small ribosomal subunit protein uS4

Chain Aw

40S ribosomal protein S23