J5_9R3A_003

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9R3A|1|A|A|60, 9R3A|1|A|A|93, 9R3A|1|A|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9R3A_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.141

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9R3A|1|A|C|58
9R3A|1|A|A|59
9R3A|1|A|A|60
9R3A|1|A|G|61
*
9R3A|1|A|C|90
9R3A|1|A|G|91
9R3A|1|A|G|92
9R3A|1|A|A|93
9R3A|1|A|C|94
9R3A|1|A|G|95
9R3A|1|A|G|96
9R3A|1|A|G|97
*
9R3A|1|A|C|288
9R3A|1|A|A|289
9R3A|1|A|C|290
*
9R3A|1|A|G|311
9R3A|1|A|A|312
9R3A|1|A|C|313
*
9R3A|1|A|G|324
9R3A|1|A|G|325
9R3A|1|A|C|326
9R3A|1|A|A|327
9R3A|1|A|G|328

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20

Chain j

Large ribosomal subunit protein uL14