J5_9R9O_001
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9R9O|1|C3|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9R9O_001 not in the Motif Atlas
- Homologous match to J5_9PN5_001
- Geometric discrepancy: 0.0613
- The information below is about J5_9PN5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9R9O|1|C1|A|20
9R9O|1|C1|G|21
9R9O|1|C1|G|22
*
9R9O|1|C3|C|35
9R9O|1|C3|G|36
9R9O|1|C3|A|37
9R9O|1|C3|U|38
9R9O|1|C3|G|39
9R9O|1|C3|A|40
9R9O|1|C3|A|41
9R9O|1|C3|G|42
*
9R9O|1|C3|U|102
9R9O|1|C3|G|103
9R9O|1|C3|A|104
9R9O|1|C3|A|105
9R9O|1|C3|C|106
9R9O|1|C3|G|107
*
9R9O|1|C3|C|115
9R9O|1|C3|G|116
*
9R9O|1|C3|C|137
9R9O|1|C3|A|138
9R9O|1|C3|U|139
Current chains
- Chain C1
- 25S ribosomal RNA
- Chain C3
- 5.8S ribosomal RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15-A
- Chain LX
- 60S ribosomal protein L25
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
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