J5_9RHU_001
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUUG(PSU)*AAAUAAC*GGAAUG*CCAU*AUA(OMG)
- Length
- 26 nucleotides
- Bulged bases
- 9RHU|1|A1|C|594
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RHU_001 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.0686
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RHU|1|A1|C|30
9RHU|1|A1|U|31
9RHU|1|A1|U|32
9RHU|1|A1|G|33
9RHU|1|A1|PSU|34
*
9RHU|1|A1|A|522
9RHU|1|A1|A|523
9RHU|1|A1|A|524
9RHU|1|A1|U|525
9RHU|1|A1|A|526
9RHU|1|A1|A|527
9RHU|1|A1|C|528
*
9RHU|1|A1|G|559
9RHU|1|A1|G|560
9RHU|1|A1|A|561
9RHU|1|A1|A|562
9RHU|1|A1|U|563
9RHU|1|A1|G|564
*
9RHU|1|A1|C|593
9RHU|1|A1|C|594
9RHU|1|A1|A|595
9RHU|1|A1|U|596
*
9RHU|1|A1|A|642
9RHU|1|A1|U|643
9RHU|1|A1|A|644
9RHU|1|A1|OMG|645
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain E1
- 40S ribosomal protein eS30
- Chain U1
- Small ribosomal subunit protein uS4
- Chain i1
- 40S ribosomal protein S23
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