J5_9RHU_003
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9RHU|1|A1|A|92, 9RHU|1|A1|C|473
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RHU|1|A1|C|53
9RHU|1|A1|A|54
9RHU|1|A1|U|55
9RHU|1|A1|G|56
*
9RHU|1|A1|C|89
9RHU|1|A1|G|90
9RHU|1|A1|A|91
9RHU|1|A1|A|92
9RHU|1|A1|PSU|93
9RHU|1|A1|G|94
9RHU|1|A1|G|95
9RHU|1|A1|C|96
*
9RHU|1|A1|G|435
9RHU|1|A1|A|436
9RHU|1|A1|OMG|437
*
9RHU|1|A1|C|458
9RHU|1|A1|A|459
9RHU|1|A1|C|460
*
9RHU|1|A1|G|471
9RHU|1|A1|G|472
9RHU|1|A1|C|473
9RHU|1|A1|A|474
9RHU|1|A1|G|475
Current chains
- Chain A1
- 18S rRNA
Nearby chains
- Chain P1
- 40S ribosomal protein S4
- Chain R1
- 40S ribosomal protein S6
- Chain R2
- Ribosomal protein L23
- Chain T1
- 40S ribosomal protein S8
- Chain U1
- Small ribosomal subunit protein uS4
- Chain j1
- 40S ribosomal protein S24
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