J5_9RJA_005
3D structure
- PDB id
- 9RJA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Manikomycin bound to the Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 9RJA|1|a|A|532, 9RJA|1|a|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RJA_005 not in the Motif Atlas
- Homologous match to J5_7A0S_003
- Geometric discrepancy: 0.186
- The information below is about J5_7A0S_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9RJA|1|a|C|531
9RJA|1|a|A|532
9RJA|1|a|G|533
*
9RJA|1|a|C|560
9RJA|1|a|G|561
9RJA|1|a|U|562
9RJA|1|a|A|563
9RJA|1|a|C|564
*
9RJA|1|a|G|577
9RJA|1|a|G|578
9RJA|1|a|G|579
*
9RJA|1|a|C|1261
9RJA|1|a|A|1262
*
9RJA|1|a|U|2017
9RJA|1|a|G|2018
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- Large ribosomal subunit protein uL4
- Chain p
- Large ribosomal subunit protein bL20
- Chain q
- Large ribosomal subunit protein bL21
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
Coloring options: