J5_9RU7_008
3D structure
- PDB id
- 9RU7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9RU7|1|S2|U|55, 9RU7|1|S2|A|92, 9RU7|1|S2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RU7|1|S2|C|53
9RU7|1|S2|A|54
9RU7|1|S2|U|55
9RU7|1|S2|G|56
*
9RU7|1|S2|C|89
9RU7|1|S2|G|90
9RU7|1|S2|A|91
9RU7|1|S2|A|92
9RU7|1|S2|U|93
9RU7|1|S2|G|94
9RU7|1|S2|G|95
9RU7|1|S2|C|96
*
9RU7|1|S2|G|434
9RU7|1|S2|A|435
9RU7|1|S2|G|436
*
9RU7|1|S2|C|457
9RU7|1|S2|A|458
9RU7|1|S2|C|459
*
9RU7|1|S2|G|470
9RU7|1|S2|G|471
9RU7|1|S2|C|472
9RU7|1|S2|A|473
9RU7|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- Small ribosomal subunit protein eS4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
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