J5_9RVC_003
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AAG
- Length
- 22 nucleotides
- Bulged bases
- 9RVC|1|a|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RVC_003 not in the Motif Atlas
- Homologous match to J5_8B0X_004
- Geometric discrepancy: 0.0929
- The information below is about J5_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.3
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9RVC|1|a|C|47
9RVC|1|a|G|48
9RVC|1|a|A|49
9RVC|1|a|U|50
9RVC|1|a|G|51
9RVC|1|a|A|52
9RVC|1|a|A|53
9RVC|1|a|G|54
*
9RVC|1|a|C|115
9RVC|1|a|G|116
9RVC|1|a|A|117
9RVC|1|a|A|118
9RVC|1|a|U|119
9RVC|1|a|G|120
*
9RVC|1|a|C|129
9RVC|1|a|A|130
*
9RVC|1|a|U|149
9RVC|1|a|A|150
9RVC|1|a|U|151
*
9RVC|1|a|A|178
9RVC|1|a|A|179
9RVC|1|a|G|180
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain s
- Large ribosomal subunit protein uL23
Coloring options: