J5_9RVC_007
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9RVC|1|a|G|1785, 9RVC|1|a|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RVC_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.1236
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9RVC|1|a|G|1718
9RVC|1|a|C|1719
9RVC|1|a|A|1720
9RVC|1|a|A|1721
9RVC|1|a|A|1722
9RVC|1|a|A|1723
9RVC|1|a|U|1724
9RVC|1|a|G|1725
9RVC|1|a|A|1726
*
9RVC|1|a|U|1750
9RVC|1|a|G|1751
*
9RVC|1|a|C|1778
9RVC|1|a|C|1779
*
9RVC|1|a|G|1783
9RVC|1|a|U|1784
9RVC|1|a|G|1785
9RVC|1|a|A|1786
9RVC|1|a|A|1787
9RVC|1|a|U|1788
9RVC|1|a|A|1789
9RVC|1|a|G|1790
9RVC|1|a|G|1791
*
9RVC|1|a|C|2015
9RVC|1|a|A|2016
9RVC|1|a|C|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain U
- Large ribosomal subunit protein uL14
- Chain d
- Large ribosomal subunit protein uL3
- Chain o
- Large ribosomal subunit protein bL19
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