J5_9RVC_009
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9RVC|1|a|U|2103, 9RVC|1|a|G|2455, 9RVC|1|a|G|2456, 9RVC|1|a|A|2457, 9RVC|1|a|U|2458
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9RVC_009 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1413
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9RVC|1|a|U|2101
9RVC|1|a|U|2102
9RVC|1|a|U|2103
9RVC|1|a|A|2104
*
9RVC|1|a|U|2270
9RVC|1|a|U|2271
9RVC|1|a|U|2272
9RVC|1|a|G|2273
*
9RVC|1|a|C|2285
9RVC|1|a|G|2286
*
9RVC|1|a|C|2308
9RVC|1|a|G|2309
*
9RVC|1|a|C|2454
9RVC|1|a|G|2455
9RVC|1|a|G|2456
9RVC|1|a|A|2457
9RVC|1|a|U|2458
9RVC|1|a|A|2459
9RVC|1|a|A|2460
9RVC|1|a|A|2461
9RVC|1|a|A|2462
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain c
- Large ribosomal subunit protein uL2
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
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