J5_9S7D_004

3D structure

PDB id

9S7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in open state (open COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUA*UUCG*CU*AG*CGGAACAA

Length

20 nucleotides

Bulged bases

9S7D|1|A|U|2739, 9S7D|1|A|G|2916, 9S7D|1|A|G|2917, 9S7D|1|A|A|2918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9S7D_004 not in the Motif Atlas

Homologous match to J5_8B0X_009

Geometric discrepancy: 0.2387

The information below is about J5_8B0X_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_39529.2

Basepair signature

cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9S7D|1|A|U|2737
9S7D|1|A|U|2738
9S7D|1|A|U|2739
9S7D|1|A|A|2740
*
9S7D|1|A|U|2807
9S7D|1|A|U|2808
9S7D|1|A|C|2809
9S7D|1|A|G|2810
*
9S7D|1|A|C|2822
9S7D|1|A|U|2823
*
9S7D|1|A|A|2845
9S7D|1|A|G|2846
*
9S7D|1|A|C|2915
9S7D|1|A|G|2916
9S7D|1|A|G|2917
9S7D|1|A|A|2918
9S7D|1|A|A|2919
9S7D|1|A|C|2920
9S7D|1|A|A|2921
9S7D|1|A|A|2922

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL33m

Chain 3

Large ribosomal subunit protein bL35m

Chain D

Large ribosomal subunit protein uL2m

Chain M

Large ribosomal subunit protein uL15m

Chain W

Large ribosomal subunit protein bL27m

Chain X

Large ribosomal subunit protein bL28m