J5_9S7E_001

3D structure

PDB id

9S7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human mitochondrial COX1-translating ribosome nascent chain-OXA1L/MITRAC complex in closed state (closed COX1-mtRNC-OXA1L/MITRAC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAA*UAUAC*GAA*UA*UG

Length

15 nucleotides

Bulged bases

9S7E|1|A|A|1828, 9S7E|1|A|U|1843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9S7E_001 not in the Motif Atlas

Homologous match to J5_7A0S_003

Geometric discrepancy: 0.1465

The information below is about J5_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_43153.6

Basepair signature

cWW-cWW-cWW-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9S7E|1|A|C|1827
9S7E|1|A|A|1828
9S7E|1|A|A|1829
*
9S7E|1|A|U|1841
9S7E|1|A|A|1842
9S7E|1|A|U|1843
9S7E|1|A|A|1844
9S7E|1|A|C|1845
*
9S7E|1|A|G|1858
9S7E|1|A|A|1859
9S7E|1|A|A|1860
*
9S7E|1|A|U|2305
9S7E|1|A|A|2306
*
9S7E|1|A|U|2680
9S7E|1|A|G|2681

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32m

Chain F

Large ribosomal subunit protein uL4m

Chain K

Large ribosomal subunit protein uL13m

Chain R

Large ribosomal subunit protein bL20m

Chain S

Large ribosomal subunit protein bL21m

Chain T

Large ribosomal subunit protein uL22m

Chain a

Large ribosomal subunit protein mL42

Chain b

Large ribosomal subunit protein mL43

Chain d

Large ribosomal subunit protein mL45