J5_9SLG_007
3D structure
- PDB id
- 9SLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Doxycycline Bound E. coli Ribosome with Rearranged Peptidyl Transferase Centre
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9SLG|1|a|U|1760, 9SLG|1|a|G|1765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9SLG_007 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2577
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SLG|1|a|G|1676
9SLG|1|a|C|1677
9SLG|1|a|A|1678
9SLG|1|a|A|1679
9SLG|1|a|A|1680
9SLG|1|a|A|1681
9SLG|1|a|U|1682
9SLG|1|a|G|1683
9SLG|1|a|G|1684
*
9SLG|1|a|C|1708
9SLG|1|a|G|1709
*
9SLG|1|a|U|1753
9SLG|1|a|C|1754
*
9SLG|1|a|G|1758
9SLG|1|a|A|1759
9SLG|1|a|U|1760
9SLG|1|a|A|1761
9SLG|1|a|C|1762
9SLG|1|a|C|1763
9SLG|1|a|A|1764
9SLG|1|a|G|1765
9SLG|1|a|C|1766
*
9SLG|1|a|G|1992
9SLG|1|a|G|1993
9SLG|1|a|C|1994
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL14
- Chain o
- Large ribosomal subunit protein bL19
Coloring options: